ENCODE
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ENCODE Encyclopedia, Version 4: Genomic annotations – ENCODE
The ENCODE Consortium not only produces high-quality data, but also analyzes the data in an integrative fashion. The ENCODE Encyclopedia organizes the most salient analysis products …
Getting Started – ENCODE
Introduction to the Portal Welcome to the ENCODE Portal! The ENCODE Portal, developed and maintained by the Data Coordination Center (ENCODE DCC), is the canonical source for all …
publications – ENCODE
ENCODE comprises thousands of functional genomics datasets, and the encyclopedia covers hundreds of cell types, providing a universal annotation for genome interpretation.
ATAC-seq Data Standards and Processing Pipeline – ENCODE
The ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment.
ENCODE Encyclopedia
The ENCODE Project aims to map all functional elements of the human and mouse genomes. Progress toward this goal has involved over ten thousand epigenomic experiments utilizing a …
SCREEN: Search Candidate Regulatory Elements by ENCODE
SCREEN is a web interface for searching and visualizing the Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE data. The Registry contains 1,063,878 human …
Search – ENCODE
Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
Project Overview – ENCODE
The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements …
FAQ – ENCODE
The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements …