BEAST Software - Bayesian Evolutionary Analysis Sampling Trees
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …
First Tutorial | BEAST Documentation
Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download …
Frequently Asked Questions | BEAST Documentation
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …
Estimating rates and dates from time-stamped sequences | BEAST ...
To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero …
Downloading and installing BEAST on UNIX/Linux
BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees. Downloading BEAST Installing using Conda Installing directly Installing OpenJDK 8 Installing …
Phylogeographic diffusion in discrete space | BEAST Documentation
Running BEAUti Running BEAST Analyzing the BEAST output using Tracer Summarizing and visualizing the trees Visualizing MCC trees and calculating Bayes factor support for rates …
Downloading and installing BEAST on Windows
Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.
BEAGLE | BEAST Documentation
Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package. It …
Construct a model in BEAUti | BEAST Documentation
This page discusses how to construct a phylogenetic model for your data using the graphical user interface in BEAUti. It describes how to link and unlink mod...
LogCombiner | BEAST Documentation
LogCombiner allows you to combine log and tree files from multiple independent runs of BEAST. It can be run with a user-interface or as a command-line utility.